PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155433
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 371aa    MW: 41267.1 Da    PI: 7.9093
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155433genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP86.56.2e-27571822105
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaess 78 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   ++ i++l+ +                   +            
  MDP0000155433  57 FGGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLRLSQPSKVIDWLLGVTEQDIDKLPPLqvphgfghhqpmlnphqanN------------ 140
                    689*************************************************************66665555555444333220............ PP

            TCP  79 sssasnsssg.......................kaaksaa.kskksqksaa 105
                             +                       ++ k +  k++++q++++
  MDP0000155433 141 ---------SliapffdvnstfmeadqvdeevrDQXKGKSiKTNDEQDDQN 182
                    .........122223333333333333333333222222212222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.32859117IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2559182IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MITNSRDKGF QAKQEGHNNN DGNNNSSFNK ASSSSTTTSR QWSGFSNPRI VRVSRAFGGK  60
DRHSKVSTVR GLRDRRIRLS VPTAIQLYDL QDRLRLSQPS KVIDWLLGVT EQDIDKLPPL  120
QVPHGFGHHQ PMLNPHQANN SLIAPFFDVN STFMEADQVD EEVRDQXKGK SIKTNDEQDD  180
QNRHDHEGNV SGQHLAQKLF PXGNHPSSIP GLLNNAMAFN YYHNYSEPST LSLAQFGSHG  240
FPQVPQTDQH RSHMMSTNAL SFSTPMASGS QLFFCPPTAT PTLFGSYPPY MTNPIVEGTS  300
TATDQPRQAS HFQFLSSSSN SQNFLANNAL MPYLHSISSS LKCFPSLVDP KQQLHLDSQN  360
NNASQPNKDV P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393237.10.0PREDICTED: transcription factor TCP5-like
TrEMBLM5WBB41e-171M5WBB4_PRUPE; Uncharacterized protein
STRINGGLYMA04G32324.15e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.17e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5